qtl: Tools for Analyzing QTL Experiments

Analysis of experimental crosses to identify genes (called quantitative trait loci, QTLs) contributing to variation in quantitative traits. Broman et al. (2003) <doi:10.1093/bioinformatics/btg112>.

Version: 1.70
Depends: R (≥ 2.14.0)
Imports: parallel, graphics, stats, utils, grDevices
Suggests: testthat
Published: 2024-08-22
DOI: 10.32614/CRAN.package.qtl
Author: Karl W Broman ORCID iD [aut, cre], Hao Wu [aut], Gary Churchill ORCID iD [ctb], Saunak Sen ORCID iD [ctb], Danny Arends ORCID iD [ctb], Robert Corty [ctb], Timothee Flutre [ctb], Ritsert Jansen [ctb], Pjotr Prins ORCID iD [ctb], Lars Ronnegard [ctb], Rohan Shah [ctb], Laura Shannon [ctb], Quoc Tran [ctb], Aaron Wolen [ctb], Brian Yandell ORCID iD [ctb], R Core Team [ctb]
Maintainer: Karl W Broman <broman at wisc.edu>
BugReports: https://github.com/kbroman/qtl/issues
License: GPL-3
Copyright: Code for Brent's method for finding the root of a univariate function was taken from R 2.15.1 (Copyright 1999, 2001 The R Core Team)
URL: https://rqtl.org, https://github.com/kbroman/qtl
NeedsCompilation: yes
Citation: qtl citation info
Materials: README NEWS
In views: Agriculture
CRAN checks: qtl results

Documentation:

Reference manual: qtl.pdf
Vignettes: Users Guide for New BCsFt Tools for R/qtl (source, R code)

Downloads:

Package source: qtl_1.70.tar.gz
Windows binaries: r-devel: qtl_1.70.zip, r-release: qtl_1.70.zip, r-oldrel: qtl_1.70.zip
macOS binaries: r-release (arm64): qtl_1.70.tgz, r-oldrel (arm64): qtl_1.70.tgz, r-release (x86_64): qtl_1.70.tgz, r-oldrel (x86_64): qtl_1.70.tgz
Old sources: qtl archive

Reverse dependencies:

Reverse depends: ASMap, ctl, QTL.gCIMapping.GUI, qtlhot, qtlnet, trigger, wgaim, xoi
Reverse imports: cape, dQTG.seq, fssemR, lineup, LinkageMapView, mppR, netgwas, qpgraph, QTL.gCIMapping, qtl2convert, qtlcharts, rNeighborQTL, statgenSTA
Reverse suggests: agridat, BayesNetBP, chromPlot, MDSMap, qtl2, qtlbook, qtlDesign, QTLRel, simcross, varbvs

Linking:

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