mutationtypes: Validate and Convert Mutational Impacts Using Standard Genomic Dictionaries

Check concordance of a vector of mutation impacts with standard dictionaries such as Sequence Ontology (SO) <>, Mutation Annotation Format (MAF) <> or Prediction and Annotation of Variant Effects (PAVE) <>. It enables conversion between SO/PAVE and MAF terms and selection of the most severe consequence where multiple ampersand (&) delimited impacts are given.

Version: 0.0.1
Imports: assertions, cli, data.table, stats, utils
Suggests: covr, testthat (≥ 3.0.0)
Published: 2023-12-14
DOI: 10.32614/CRAN.package.mutationtypes
Author: Sam El-Kamand ORCID iD [aut, cre], Children's Cancer Institute Australia [cph]
Maintainer: Sam El-Kamand <sam.elkamand at>
License: LGPL (≥ 3)
NeedsCompilation: no
Materials: README
CRAN checks: mutationtypes results


Reference manual: mutationtypes.pdf


Package source: mutationtypes_0.0.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): mutationtypes_0.0.1.tgz, r-oldrel (arm64): mutationtypes_0.0.1.tgz, r-release (x86_64): mutationtypes_0.0.1.tgz, r-oldrel (x86_64): mutationtypes_0.0.1.tgz


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