incidence: Compute, Handle, Plot and Model Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<>) toolkit for outbreak analysis.

Version: 1.7.5
Imports: ggplot2 (≥ 3.3.2), aweek (≥ 0.2.0)
Suggests: magrittr, outbreaks, testthat, vdiffr, knitr, rmarkdown, scales, cowplot
Published: 2024-05-31
DOI: 10.32614/CRAN.package.incidence
Author: Thibaut Jombart [aut], Zhian N. Kamvar ORCID iD [aut], Rich FitzJohn [aut], Tim Taylor ORCID iD [cre], Jun Cai ORCID iD [ctb], Sangeeta Bhatia [ctb], Jakob Schumacher [ctb], Juliet R.C. Pulliam ORCID iD [ctb]
Maintainer: Tim Taylor <tim.taylor at>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: incidence citation info
Materials: NEWS
In views: Epidemiology
CRAN checks: incidence results


Reference manual: incidence.pdf
Vignettes: Conversions
Customise graphics
Incidence class
Incidence fit class


Package source: incidence_1.7.5.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): incidence_1.7.5.tgz, r-oldrel (arm64): incidence_1.7.5.tgz, r-release (x86_64): incidence_1.7.5.tgz, r-oldrel (x86_64): incidence_1.7.5.tgz
Old sources: incidence archive

Reverse dependencies:

Reverse imports: epiCo, EpiEstim, projections
Reverse suggests: earlyR, epitrix, outbreaks


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