fdrci: Permutation-Based FDR Point and Confidence Interval Estimation

FDR functions for permutation-based estimators, including pi0 as well as FDR confidence intervals. The confidence intervals account for dependencies between tests by the incorporation of an overdispersion parameter, which is estimated from the permuted data. Also included are options for an analog parametric approach.

Version: 2.4
Imports: ggplot2, stats
Suggests: rmarkdown, knitr, GEOquery, dplyr, foreach
Published: 2022-10-18
DOI: 10.32614/CRAN.package.fdrci
Author: Joshua Millstein [aut, cre]
Maintainer: Joshua Millstein <joshua.millstein at usc.edu>
License: Artistic-2.0
NeedsCompilation: no
Citation: fdrci citation info
Materials: README
CRAN checks: fdrci results


Reference manual: fdrci.pdf
Vignettes: fdrci: FDR selection and adjustment - HGSOC


Package source: fdrci_2.4.tar.gz
Windows binaries: r-devel: fdrci_2.4.zip, r-release: fdrci_2.4.zip, r-oldrel: fdrci_2.4.zip
macOS binaries: r-release (arm64): fdrci_2.4.tgz, r-oldrel (arm64): fdrci_2.4.tgz, r-release (x86_64): fdrci_2.4.tgz, r-oldrel (x86_64): fdrci_2.4.tgz
Old sources: fdrci archive


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