ddpcr: Analysis and Visualization of Droplet Digital PCR in R and on the Web

An interface to explore, analyze, and visualize droplet digital PCR (ddPCR) data in R. This is the first non-proprietary software for analyzing two-channel ddPCR data. An interactive tool was also created and is available online to facilitate this analysis for anyone who is not comfortable with using R.

Version: 1.15.2
Depends: R (≥ 3.1.0)
Imports: DT (≥ 0.2), dplyr (≥ 0.5.0), ggplot2 (≥ 2.2.0), lazyeval (≥ 0.1.10), magrittr (≥ 1.5), mixtools (≥ 1.0.2), plyr (≥ 1.8.1), readr (≥ 0.1.0), shiny (≥ 0.11.0), shinydisconnect, shinyjs (≥ 0.4.0), tibble
Suggests: ggExtra (≥ 0.3.0), graphics, grid (≥ 3.2.2), gridExtra (≥ 2.0.0), knitr (≥ 1.7), rmarkdown, stats, testthat (≥ 0.11.0), utils
Published: 2023-08-20
DOI: 10.32614/CRAN.package.ddpcr
Author: Dean Attali ORCID iD [aut, cre]
Maintainer: Dean Attali <daattali at gmail.com>
BugReports: https://github.com/daattali/ddpcr/issues
License: MIT + file LICENSE
URL: https://github.com/daattali/ddpcr, https://daattali.com/shiny/ddpcr/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: ddpcr results


Reference manual: ddpcr.pdf
Vignettes: Algorithms in ddpcr analysis
Extending ddpcr by adding new plate types
Package ddpcr
Implementation technical details


Package source: ddpcr_1.15.2.tar.gz
Windows binaries: r-devel: ddpcr_1.15.2.zip, r-release: ddpcr_1.15.2.zip, r-oldrel: ddpcr_1.15.2.zip
macOS binaries: r-release (arm64): ddpcr_1.15.2.tgz, r-oldrel (arm64): ddpcr_1.15.2.tgz, r-release (x86_64): ddpcr_1.15.2.tgz, r-oldrel (x86_64): ddpcr_1.15.2.tgz
Old sources: ddpcr archive

Reverse dependencies:

Reverse imports: CDatanet
Reverse suggests: RRphylo, vMF


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