copyseparator: Assembling Long Gene Copies from Short Read Data

Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.

Version: 1.2.0
Depends: R (≥ 3.5.0)
Imports: ape, seqinr, stringr, kmer, DECIPHER, beepr, Biostrings, grDevices, doParallel, foreach, parallel
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2022-11-25
DOI: 10.32614/CRAN.package.copyseparator
Author: Lei Yang
Maintainer: Lei Yang <leiyangslu at>
License: GPL-2
NeedsCompilation: no
Materials: NEWS
CRAN checks: copyseparator results


Reference manual: copyseparator.pdf
Vignettes: Usage_of_copyseparator


Package source: copyseparator_1.2.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): copyseparator_1.2.0.tgz, r-oldrel (arm64): copyseparator_1.2.0.tgz, r-release (x86_64): copyseparator_1.2.0.tgz, r-oldrel (x86_64): copyseparator_1.2.0.tgz
Old sources: copyseparator archive


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