UCSCXenaShiny: Interactive Analysis of UCSC Xena Data

Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.

Version: 2.1.0
Depends: R (≥ 3.5)
Imports: digest, dplyr (≥ 0.8.3), ezcox, forcats, ggplot2 (≥ 3.2.0), ggpubr (≥ 0.2), httr, magrittr (≥ 1.5), ppcor, psych, purrr, rlang, shiny (≥ 1.3.2), stats, stringr, tibble (≥ 2.1.3), tidyr, UCSCXenaTools, utils
Suggests: covr (≥ 3.2.1), cowplot, DT (≥ 0.5), furrr, future, ggrepel, ggstatsplot, knitr, pacman, plotly, plyr, RColorBrewer (≥ 1.1.2), rmarkdown, Rtsne, scales, survival, survminer, testthat (≥ 2.0.1), umap
Published: 2024-05-15
DOI: 10.32614/CRAN.package.UCSCXenaShiny
Author: Shixiang Wang ORCID iD [aut, cre], Shensuo Li [aut], Yi Xiong ORCID iD [aut], Longfei Zhao ORCID iD [aut], Kai Gu ORCID iD [aut], Yin Li [aut], Fei Zhao [aut]
Maintainer: Shixiang Wang <w_shixiang at 163.com>
BugReports: https://github.com/openbiox/UCSCXenaShiny/issues
License: GPL (≥ 3)
URL: https://github.com/openbiox/UCSCXenaShiny, https://openbiox.github.io/UCSCXenaShiny/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: UCSCXenaShiny results


Reference manual: UCSCXenaShiny.pdf
Vignettes: Accessible Functions


Package source: UCSCXenaShiny_2.1.0.tar.gz
Windows binaries: r-devel: UCSCXenaShiny_2.1.0.zip, r-release: UCSCXenaShiny_2.1.0.zip, r-oldrel: UCSCXenaShiny_2.1.0.zip
macOS binaries: r-release (arm64): UCSCXenaShiny_2.1.0.tgz, r-oldrel (arm64): UCSCXenaShiny_2.1.0.tgz, r-release (x86_64): UCSCXenaShiny_2.1.0.tgz, r-oldrel (x86_64): UCSCXenaShiny_2.1.0.tgz
Old sources: UCSCXenaShiny archive


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