Rtsne: T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation

An R wrapper around the fast T-distributed Stochastic Neighbor Embedding implementation by Van der Maaten (see <https://github.com/lvdmaaten/bhtsne/> for more information on the original implementation).

Version: 0.17
Imports: Rcpp (≥ 0.11.0), stats
LinkingTo: Rcpp
Suggests: irlba, testthat
Published: 2023-12-07
DOI: 10.32614/CRAN.package.Rtsne
Author: Jesse Krijthe [aut, cre], Laurens van der Maaten [cph] (Author of original C++ code)
Maintainer: Jesse Krijthe <jkrijthe at gmail.com>
License: file LICENSE
URL: https://github.com/jkrijthe/Rtsne
NeedsCompilation: yes
Citation: Rtsne citation info
Materials: README NEWS
CRAN checks: Rtsne results


Reference manual: Rtsne.pdf


Package source: Rtsne_0.17.tar.gz
Windows binaries: r-devel: Rtsne_0.17.zip, r-release: Rtsne_0.17.zip, r-oldrel: Rtsne_0.17.zip
macOS binaries: r-release (arm64): Rtsne_0.17.tgz, r-oldrel (arm64): Rtsne_0.17.tgz, r-release (x86_64): Rtsne_0.17.tgz, r-oldrel (x86_64): Rtsne_0.17.tgz
Old sources: Rtsne archive

Reverse dependencies:

Reverse depends: BiRewire, KODAMA
Reverse imports: AutoPipe, bbknnR, CATALYST, ccfindR, celda, CelliD, CellTrails, ChromSCape, chromVAR, CINNA, CiteFuse, conos, densityClust, densvis, EmbedSOM, esetVis, EvoPhylo, fastTopics, FateID, FlowSOM, HDclust, HIPPO, homosapienDEE2CellScore, iCellR, ILoReg, immunarch, labdsv, Linnorm, M3C, maotai, MatrixQCvis, MBMethPred, Mercator, microbiome, MOFA2, monocle, MOSS, netDx, PAC, pagoda2, pipeComp, PsychWordVec, RaceID, randomcoloR, RCSL, regioneReloaded, rliger, scater, scMultiSim, Sconify, scRNAtools, scTHI, scTreeViz, Seurat, sincell, SingleCellSignalR, singleCellTK, SNPfiltR, spathial, SubCellBarCode, swaRmverse, systemPipeTools, theftdlc, TOmicsVis, tomoda, visvow, WormTensor, ZetaSuite
Reverse suggests: ASURAT, AUCell, BloodCancerMultiOmics2017, CellMixS, clusterExperiment, cola, coRanking, COTAN, diceR, dimRed, dyndimred, Evacluster, fdm2id, HCAData, HDCytoData, iasva, iSEEu, liminal, MiscMetabar, mmb, netSmooth, NewWave, NGCHM, pctax, proActiv, ProjectionBasedClustering, pRoloc, qmtools, scBFA, scds, scGPS, seriation, SingleCellExperiment, spatialHeatmap, SPIAT, stm, structToolbox, systemPipeShiny, tidybulk, tinyarray, UCSCXenaShiny, velociraptor, zinbwave


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