CleanBSequences: Curing of Biological Sequences

Curates biological sequences massively, quickly, without errors and without internet connection. Biological sequences curing is performed by aligning the forward and / or revers primers or ends of cloning vectors with the sequences to be cleaned. After the alignment, new subsequences are generated without biological fragment not desired by the user. Pozzi et al (2020) <doi:10.1007/s00438-020-01671-z>.

Version: 2.3.0
Depends: pwalign, Biostrings
Published: 2024-05-09
DOI: 10.32614/CRAN.package.CleanBSequences
Author: Florencia I. Pozzi, Silvina A. Felitti
Maintainer: Florencia I. Pozzi <florenciapoz at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: CleanBSequences results


Reference manual: CleanBSequences.pdf


Package source: CleanBSequences_2.3.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): CleanBSequences_2.3.0.tgz, r-oldrel (arm64): CleanBSequences_1.4.0.tgz, r-release (x86_64): CleanBSequences_1.4.0.tgz, r-oldrel (x86_64): CleanBSequences_1.4.0.tgz
Old sources: CleanBSequences archive


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