phoenics: Pathways Longitudinal and Differential Analysis in Metabolomics

Perform a differential analysis at pathway level based on metabolite quantifications and information on pathway metabolite composition. The method is based on a Principal Component Analysis step and on a linear mixed model. Automatic query of metabolic pathways is also implemented.

Version: 0.1
Depends: R (≥ 4.0.0)
Imports: lme4, blme, tibble, FactoMineR, factoextra, tidyr, stats
Suggests: KEGGREST
Published: 2024-05-22
DOI: NA
Author: Camille Guilmineau [aut, cre], Remi Servien ORCID iD [aut], Nathalie Vialaneix ORCID iD [aut]
Maintainer: Camille Guilmineau <camille.guilmineau at inrae.fr>
BugReports: https://forgemia.inra.fr/panoramics/phoenics/-/issues
License: GPL-3
URL: https://forgemia.inra.fr/panoramics/phoenics
NeedsCompilation: no
Citation: phoenics citation info
Materials: NEWS
CRAN checks: phoenics results

Documentation:

Reference manual: phoenics.pdf

Downloads:

Package source: phoenics_0.1.tar.gz
Windows binaries: r-devel: phoenics_0.1.zip, r-release: phoenics_0.1.zip, r-oldrel: phoenics_0.1.zip
macOS binaries: r-release (arm64): phoenics_0.1.tgz, r-oldrel (arm64): phoenics_0.1.tgz, r-release (x86_64): phoenics_0.1.tgz, r-oldrel (x86_64): phoenics_0.1.tgz

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