mSigTools: Mutational Signature Analysis Tools

Utility functions for mutational signature analysis as described in Alexandrov, L. B. (2020) <doi:10.1038/s41586-020-1943-3>. This package provides two groups of functions. One is for dealing with mutational signature "exposures" (i.e. the counts of mutations in a sample that are due to each mutational signature). The other group of functions is for matching or comparing sets of mutational signatures. 'mSigTools' stands for mutational Signature analysis Tools.

Version: 1.0.7
Imports: clue, philentropy, quadprog, sets
Suggests: cosmicsig, ICAMS, spelling, testthat (≥ 3.0.0)
Published: 2023-01-13
DOI: NA
Author: Steven Rozen ORCID iD [aut, cre], Nanhai Jiang ORCID iD [aut]
Maintainer: Steven Rozen <steverozen at pm.me>
BugReports: https://github.com/Rozen-Lab/mSigTools/issues
License: GPL-3
URL: https://github.com/Rozen-Lab/mSigTools
NeedsCompilation: no
Language: en-US
Citation: mSigTools citation info
Materials: README NEWS
CRAN checks: mSigTools results

Documentation:

Reference manual: mSigTools.pdf

Downloads:

Package source: mSigTools_1.0.7.tar.gz
Windows binaries: r-devel: mSigTools_1.0.7.zip, r-release: mSigTools_1.0.7.zip, r-oldrel: mSigTools_1.0.7.zip
macOS binaries: r-release (arm64): mSigTools_1.0.7.tgz, r-oldrel (arm64): mSigTools_1.0.7.tgz, r-release (x86_64): mSigTools_1.0.7.tgz, r-oldrel (x86_64): mSigTools_1.0.7.tgz
Old sources: mSigTools archive

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