gaston: Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models

Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML). Dandine et al <doi:10.1159/000488519>.

Version: 1.6
Depends: Rcpp, RcppParallel, methods
LinkingTo: Rcpp, RcppParallel, RcppEigen
Suggests: knitr, RcppEigen
Published: 2023-12-07
DOI: 10.32614/CRAN.package.gaston
Author: Hervé Perdry [cre, aut, cph], Claire Dandine-Roulland [aut, cph], Deepak Bandyopadhyay [cph] (C++ gzstream class), Lutz Kettner [cph] (C++ gzstream class)
Maintainer: Hervé Perdry <herve.perdry at>
License: GPL-3
NeedsCompilation: yes
Materials: NEWS
CRAN checks: gaston results


Reference manual: gaston.pdf
Vignettes: gaston faq
gaston package


Package source: gaston_1.6.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): gaston_1.6.tgz, r-oldrel (arm64): gaston_1.6.tgz, r-release (x86_64): gaston_1.6.tgz, r-oldrel (x86_64): gaston_1.6.tgz
Old sources: gaston archive

Reverse dependencies:

Reverse depends: milorGWAS, Ravages
Reverse imports: hierfstat, RAINBOWR, rNeighborGWAS, rNeighborQTL, snpsettest
Reverse linking to: milorGWAS, Ravages
Reverse suggests: bigsnpr


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