admixr: An Interface for Running 'ADMIXTOOLS' Analyses

An interface for performing all stages of 'ADMIXTOOLS' analyses (<>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.

Version: 0.9.1
Depends: R (≥ 3.6.0)
Imports: dplyr, magrittr, readr, stringr, tibble, stats, rlang, utils
Suggests: covr, glue, testthat, tidyr, knitr, rmarkdown, tidyverse
Published: 2020-07-03
DOI: 10.32614/CRAN.package.admixr
Author: Martin Petr ORCID iD [aut, cre]
Maintainer: Martin Petr <contact at>
License: MIT + file LICENSE
NeedsCompilation: no
SystemRequirements: ADMIXTOOLS suite of command-line utilities for population genetics. See <> for the most recent installation instructions and further information.
Materials: README NEWS
CRAN checks: admixr results


Reference manual: admixr.pdf
Vignettes: Fitting qpAdm models with a 'rotation' strategy
Tutorial and basic overview of the admixr R package


Package source: admixr_0.9.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): admixr_0.9.1.tgz, r-oldrel (arm64): admixr_0.9.1.tgz, r-release (x86_64): admixr_0.9.1.tgz, r-oldrel (x86_64): admixr_0.9.1.tgz

Reverse dependencies:

Reverse suggests: slendr


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