QurvE: Robust and User-Friendly Analysis of Growth and Fluorescence Curves

High-throughput analysis of growth curves and fluorescence data using three methods: linear regression, growth model fitting, and smooth spline fit. Analysis of dose-response relationships via smoothing splines or dose-response models. Complete data analysis workflows can be executed in a single step via user-friendly wrapper functions. The results of these workflows are summarized in detailed reports as well as intuitively navigable 'R' data containers. A 'shiny' application provides access to all features without requiring any programming knowledge. The package is described in further detail in Wirth et al. (2023) <doi:10.1038/s41596-023-00850-7>.

Version: 1.1.1
Depends: dplyr, methods, R (≥ 4.0), stringr, tidyr
Imports: doParallel, drc, DT, foreach, ggh4x, ggnewscale, ggplot2, ggpubr, kableExtra, knitr, labeling, magrittr, minpack.lm, plyr, purrr, RColorBrewer, readxl, rmarkdown, scales, shiny, stats, utils
Suggests: bookdown, Cairo, htmltools, plotrix, prettydoc, rlang, shinyBS, shinycssloaders, shinyFiles, shinyjs, shinysurveys, shinythemes, testthat (≥ 3.0.0), tibble, tinytex
Published: 2024-01-26
DOI: 10.32614/CRAN.package.QurvE
Author: Nicolas T. Wirth ORCID iD [aut, cre, cph], Jonathan Funk [aut] (Co-developer of shiny app.), Matthias Kahm [ctb] (Author of 'grofit' package, whose general data structure was adopted for QurvE.), Maik Kschischo [ctb] (Author of 'grofit' package, whose general data structure was adopted for QurvE.), Thomas Petzoldt ORCID iD [ctb] (Creator of the package 'growthrates', whose function for calculating linear regressions served as a template in QurvE.), Andrew Stein [ctb] (Creator of 'xgxr' package from which QurvE adopted code to plot axis ticks on log10 scale.), Michael W. Kearney [ctb] (Creator of 'tfse' package from which QurvE adopted the match_arg function.), Santiago I. Hurtado [ctb] (Creator of 'RobustLinearReg' package from which QurvE adopted the Theil Sehn Regression method.), Mark Heckmann [ctb] (Creator of the 'zipFastener' function; source: https://ryouready.wordpress.com/2009/03/27/r-zip-fastener-for-two-data-frames-combining-rows-or-columns-of-two-dataframes-in-an-alternating-manner/), Nicholas Hamilton [ctb] (Creator of the 'colFmt' function.), Evan Friedland [ctb] (Creator of the 'inflect' function.), Heather Turner [ctb] (Creator of the 'base_breaks' function.), Georgi N. Boshnakov [ctb] (Creator of 'gbRd' package from which functions are used to display function help pages within the shiny app.)
Maintainer: Nicolas T. Wirth <mail.nicowirth at gmail.com>
BugReports: https://github.com/NicWir/QurvE/issues
License: GPL (≥ 3)
URL: https://github.com/NicWir/QurvE, https://nicwir.github.io/QurvE/
NeedsCompilation: yes
Materials: NEWS
CRAN checks: QurvE results


Reference manual: QurvE.pdf
Vignettes: QurvE User Manual v.1.0
Q&A and Troubleshooting
Quantitiative Fluorescence Curve Evaluation with Package 'QurvE'
Quantitiative Growth Curve Evaluation with Package 'QurvE'


Package source: QurvE_1.1.1.tar.gz
Windows binaries: r-devel: QurvE_1.1.1.zip, r-release: QurvE_1.1.1.zip, r-oldrel: QurvE_1.1.1.zip
macOS binaries: r-release (arm64): QurvE_1.1.1.tgz, r-oldrel (arm64): QurvE_1.1.1.tgz, r-release (x86_64): QurvE_1.1.1.tgz, r-oldrel (x86_64): QurvE_1.1.1.tgz
Old sources: QurvE archive


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