IFC: Tools for Imaging Flow Cytometry

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Version: 0.2.1
Depends: R (≥ 3.4.0)
Imports: Rcpp (≥ 0.10.0), xml2, utils, grid, gridExtra, gridGraphics, lattice, latticeExtra, KernSmooth, DT, visNetwork
LinkingTo: Rcpp
Suggests: IFCdata, shiny, reticulate, png, tiff, jpeg
Published: 2023-09-13
DOI: 10.32614/CRAN.package.IFC
Author: Yohann Demont [aut, cre], Gautier Stoll [ctb], Guido Kroemer [ldr], Jean-Pierre Marolleau [ldr], Loïc Garçon [ldr]
IFC author details
Maintainer: Yohann Demont <git.demont at gmail.com>
BugReports: https://github.com/gitdemont/IFC/issues
License: GPL-3
Copyright: file inst/COPYRIGHTS
IFC copyright details
NeedsCompilation: yes
Additional_repositories: https://gitdemont.github.io/IFCdata/
Citation: IFC citation info
CRAN checks: IFC results


Reference manual: IFC.pdf


Package source: IFC_0.2.1.tar.gz
Windows binaries: r-devel: IFC_0.2.1.zip, r-release: IFC_0.2.1.zip, r-oldrel: IFC_0.2.1.zip
macOS binaries: r-release (arm64): IFC_0.2.1.tgz, r-oldrel (arm64): IFC_0.2.1.tgz, r-release (x86_64): IFC_0.2.1.tgz, r-oldrel (x86_64): IFC_0.2.1.tgz
Old sources: IFC archive


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