EmbedSOM: Fast Embedding Guided by Self-Organizing Map

Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) <doi:10.12688/f1000research.21642.1>.

Version: 2.1.2
Depends: R (≥ 3.2)
Imports: FNN, ggplot2, igraph, Matrix, Rtsne, umap, uwot
Suggests: knitr, rmarkdown
Published: 2022-07-05
DOI: 10.32614/CRAN.package.EmbedSOM
Author: Mirek Kratochvil [aut, cre], Sofie Van Gassen [cph], Britt Callebaut [cph], Yvan Saeys [cph], Ron Wehrens [cph]
Maintainer: Mirek Kratochvil <exa.exa at gmail.com>
License: GPL (≥ 3)
URL: https://github.com/exaexa/EmbedSOM
NeedsCompilation: yes
Citation: EmbedSOM citation info
Materials: README
CRAN checks: EmbedSOM results


Reference manual: EmbedSOM.pdf
Vignettes: EmbedSOM basic embedding


Package source: EmbedSOM_2.1.2.tar.gz
Windows binaries: r-devel: EmbedSOM_2.1.2.zip, r-release: EmbedSOM_2.1.2.zip, r-oldrel: EmbedSOM_2.1.2.zip
macOS binaries: r-release (arm64): EmbedSOM_2.1.2.tgz, r-oldrel (arm64): EmbedSOM_2.1.2.tgz, r-release (x86_64): EmbedSOM_2.1.2.tgz, r-oldrel (x86_64): EmbedSOM_2.1.2.tgz
Old sources: EmbedSOM archive


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