CRAN Package Check Results for Package BoolNet

Last updated on 2024-07-25 06:52:09 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.9 27.45 95.03 122.48 NOTE
r-devel-linux-x86_64-debian-gcc 2.1.9 20.00 70.98 90.98 NOTE
r-devel-linux-x86_64-fedora-clang 2.1.9 153.26 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.9 155.24 NOTE
r-devel-windows-x86_64 2.1.9 28.00 113.00 141.00 NOTE
r-patched-linux-x86_64 2.1.9 23.68 90.77 114.45 NOTE
r-release-linux-x86_64 2.1.9 21.30 91.70 113.00 NOTE
r-release-macos-arm64 2.1.9 51.00 NOTE
r-release-macos-x86_64 2.1.9 74.00 NOTE
r-release-windows-x86_64 2.1.9 25.00 112.00 137.00 NOTE
r-oldrel-macos-arm64 2.1.9 48.00 OK
r-oldrel-macos-x86_64 2.1.9 183.00 OK
r-oldrel-windows-x86_64 2.1.9 29.00 124.00 153.00 OK

Check Details

Version: 2.1.9
Check: Rd files
Result: NOTE checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup? 23 | Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state. | ^ checkRd: (-1) plotSequence.Rd:42: Lost braces; missing escapes or markup? 42 | Specifies whether the actual attractor states are included in the plot or not (see also \code{\link{getPathToAttractor}}). If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. | ^ checkRd: (-1) sequenceToLaTeX.Rd:37: Lost braces; missing escapes or markup? 37 | Specifies whether the actual attractor states are included in the table or not (see also \code{\link{getPathToAttractor}}). If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. | ^ checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup? 131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies. | ^ checkRd: (-1) testNetworkProperties.Rd:140: Lost braces 140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64